Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
3ijp (A)
  Conformer 2
(PDB)
3ijp (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 87 0.39   2 - 6   14 - 71   123 - 125   237 - 251   258 - 263
2 64 0.4   7 - 13   72 - 122   252 - 257
3 111 0.31   126 - 236

Sequence


           ______6_______________________________________________________________71________________________________________________ 
 3ijp(A) : SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKYTTIV 
         :                                                                                                                          
 3ijp(B) : SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKYTTIV 
           ______6_______________________________________________________________71________________________________________________ 

           122_____________________________________________________________________________________________________________234_____ 
 3ijp(A) : KSGNMSLGVNLLANLVKRAAKALDDDFDIEIYEMHHANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHTGKREKGTIGFACSRGGTVIGDHSITFAGENERIVLSHIAQERSIFA 
         :                                                                                                                          
 3ijp(B) : KSGNMSLGVNLLANLVKRAAKALDDDFDIEIYEMHHANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHTGKREKGTIGFACSRGGTVIGDHSITFAGENERIVLSHIAQERSIFA 
           122_____________________________________________________________________________________________________________234_____ 

           _________251___257_________                                                                                              
 3ijp(A) : NGALKAALWAKNHENGLYSMLDVLGL*                                                                                              
         :                                                                                                                          
 3ijp(B) : NGALKAALWAKNHENGLYSMLDVLGLN                                                                                              
           _________251___257_________                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.1
Translation
(A)
0.1
Closure
(%)
38.8
Bending Residues
( green )
  6 - 15
  71 - 72
  122 - 123
  251 - 252
  257 - 258
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
31.1
Translation
(A)
0.9
Closure
(%)
42.7
Bending Residues
( green )
  124 - 130
  234 - 240
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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