Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
1arz (A)
  Conformer 2
(PDB)
1arz (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 151 1.21   7 - 128   241 - 269
2 114 0.46   129 - 240   270 - 271

Sequence


           ________________________________________________________________________________________________________________________ 
 1arz(A) : ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAI 
         :                                                                                                                          
 1arz(B) : *NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAI 
           ________________________________________________________________________________________________________________________ 

           __128___________________________________________________________________________________________________________238_____ 
 1arz(A) : VFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTF 
         :                                                                                                                          
 1arz(B) : VFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTF 
           __128___________________________________________________________________________________________________________238_____ 

           _______________________269____                                                                                           
 1arz(A) : ANGAVRSALWLSGKESGLFDMRDVLDLNNL                                                                                           
         :                                                                                                                          
 1arz(B) : ANGAVRSALWLSGKESGLFDMRDVLDLNNL                                                                                           
           _______________________269____                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
31.5
Translation
(A)
0.7
Closure
(%)
100.0
Bending Residues
( green )
  128 - 131
  238 - 241
  269 - 271
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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