Dipeptidyl-Peptidase 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dipeptidyl-Peptidase 3
  Conformer 1
(PDB)
3fvy (A)
  Conformer 2
(PDB)
3t6j (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 424 0.62   7 - 334   374 - 417   669 - 724
2 287 1.32   335 - 373   421 - 668

Sequence


           ________________________________________________________________________________________________________________________ 
 3fvy(A) : ***QYILPNDIGVSSLDCREAFRLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSRLFRAQDPDQLHQHALAEGLTEEEYQAFLVYAAGVYSNMGNYKSFGDTKFVPNLPKE 
         :                                                                                                                          
 3t6j(A) : ADTQYILPNDIGVSSLDCREAFRLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSRLFRAQDPDQLRQHALAEGLTEEEYQAFLVYAAGVYSNMGNYKSFGDTKFVPNLPKE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fvy(A) : KLERVILGSEAAQQHPEEVRGLWQTCGELMFSLEPRLRHLGLGKEGITTYFSGNCTMEDAKLAQDFLDSQNLSAYNTRLFKEVDGEGKPYYEVRLASVLGSE----sEVTSKLKSYEFRG 
         :                                                                                                                          
 3t6j(A) : KLERVILGSEAAQQHPEEVRGLWQTCGELMFSLEPRLRHLGLGKEGITTYFSGNCTMEDAKLAQDFLDSQNLSAYNTRLFKEVDGEGKPYYEVRLASVLGSEPSLDSEVTSKLKSYEFRG 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________333____________________________ 
 3fvy(A) : SPFQVTRGDYAPILQKVVEQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRGSRFWIQDKGPIVESYIGFIESYRDPFGSRGEFEGFVAVVNKAMSAKFERLVASAEQLLKELPWPP 
         :                                                                                                                          
 3t6j(A) : SPFQVTRGDYAPILQKVVEQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRGSRFWIQDKGPIVESYIGFIESYRDPFGSRGEFEGFVAVVNKAMSAKFERLVASAEQLLKELPWPP 
           _________________________________________________________________________________________333____________________________ 

           _________373________________________________________416_________________________________________________________________ 
 3fvy(A) : TFEKDKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLRQTEGFKNVSLGNVLAVAYATQREKLTFLEEDDKDLYILWKGPSFDVQVGLHELLGHGSGKLFVQDEKGAFNFDQETVINPET 
         :                                                                                                                          
 3t6j(A) : TFEKDKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLRQTEGFKNVSLGNVLAVAY---rEKLTFLEEDDKDLYILWKGPSFDVQVGLHALLGHGSGKLFVQDEKGAFNFDQETVINPET 
           _________373________________________________________416_________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fvy(A) : GEQIQSWYRSGETWDSKFSTIASSYEECRAESVGLYLCLHPQVLEIFGFEGADAEDVIYVNWLNMVRAGLLALEFYTPEAFNWRQAHMQARFVILRVLLEAGEGLVTITPTTGSDGRPDA 
         :                                                                                                                          
 3t6j(A) : GEQIQSWYRSGETWDSKFSTIASSYEECRAESVGLYLCLHPQVLEIFGFEGADAEDVIYVNWLNMVRAGLLALEFYTPEAFNWRQAHMQARFVILRVLLEAGEGLVTITPTTGSDGRPDA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________668_____________________________________________________ 
 3fvy(A) : RVRLDRSKIRSVGKPALERFLRRLQVLKSTGDVAGGRALYEGYATVTDAPPECFLTLRDTVLLRKESRKLIVQPNTRLEGSDVQLLEYEASAAGLIRSFSERFPEDGPELEEILTQLATA 
         :                                                                                                                          
 3t6j(A) : RVRLDRSKIRSVGKPALERFLRRLQVLKSTGDVAGGRALYEGYATVTDAPPECFLTLRDTVLLRKESRKLIVQPNTRLEGSDVQLLEYEASAAGLIRSFSERFPEDGPELEEILTQLATA 
           ________________________________________________________________668_____________________________________________________ 

           _____                                                                                                                    
 3fvy(A) : DARFW                                                                                                                    
         :                                                                                                                          
 3t6j(A) : DARFW                                                                                                                    
           _____                                                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
58.4
Translation
(A)
-2.9
Closure
(%)
100.0
Bending Residues
( green )
  333 - 341
  373 - 375
  416 - 422
  668 - 670
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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