D-3-Phosphoglycerate Dehydrogenase, Putative

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-3-Phosphoglycerate Dehydrogenase, Putative
  Conformer 1
(PDB)
4nfy (A)
  Conformer 2
(PDB)
4njm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 172 0.65   100 - 271
2 125 0.4   3 - 99   272 - 299

Sequence


           _________________________________________________________________________________________________97_____________________ 
 4nfy(A) : **MKIVVITEKPFAENAVKGIREILEKAGHEVVMIEKYKKKEDVIERIKDADGVIVRSDKIDEEIIKAGEKVKIIVRAGAGYDNIDIEACNQGKIVVMNTPGQNRNGVAELCIGMMIFGF 
         :                                                                                                                          
 4njm(A) : ASMKIVVITEKPFAENAVKGIREILEKAGHEVVMIEKYKKKEDVIERIKDADGVIVRSDKIDEEIIKAGEKVKIIVRAGAGYDNIDIEACNQGKIVVMNTPGQNRNGVAELCIGMMIFGF 
           _________________________________________________________________________________________________97_____________________ 

           ________________________________________________________________________________________________________________________ 
 4nfy(A) : RKGFKEGKGRELKDKTLGICGCGYVGKRVKEIAEGIGMKIKVYDPFITTENQVKKIEELFEECQVISLHLPLTKETKGKIGYELIKKLPYGGMICNTARKEIIDEEGLIRIMREREDLIY 
         :                                                                                                                          
 4njm(A) : RKGFKEGKGRELKDKTLGICGCGYVGKRVKEIAEGIGMKIKVYDPFITTENQVKKIEELFEECQVISLHLPLTKETKGKIGYELIKKLPYGGMICNTARKEIIDEEGLIRIMREREDLIY 
           ________________________________________________________________________________________________________________________ 

           ____________________________269_________________________________                                                         
 4nfy(A) : ITDVAPTSKVFNNEFKGRFFATPIKIGAETEESNINAGMAAASQICDFFTNGTVKFQVNKFLEH                                                         
         :                                                                                                                          
 4njm(A) : ITDVAPTSKVFNNEFKGRFFATPIKIGAETEESNINAGMAAASQICDFFTNGTVKFQVNKFLE*                                                         
           ____________________________269_________________________________                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
33.6
Translation
(A)
-1.5
Closure
(%)
95.9
Bending Residues
( green )
  97 - 104
  269 - 275
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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