2-Methylcitrate Synthase, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Methylcitrate Synthase, Mitochondrial
  Conformer 1
(PDB) 		5uqo (A)
  Conformer 2
(PDB) 		6bol (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 318 0.65   34 - 83   94 - 305   349 - 354   359 - 360   369 - 374   419 - 420   422 - 422   424 - 462
2 111 0.97   84 - 93   306 - 348   355 - 358   361 - 368   375 - 418   421 - 421   423 - 423

Sequence


           ___________________________________________________83________93_________________________________________________________ 
 5uqo(A) : AEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQSHLPQ 
         :                                                                                                                          
 6bol(A) : *EPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQSHLPQ 
           ___________________________________________________83________93_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5uqo(A) : HILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALHGDHE 
         :                                                                                                                          
 6bol(A) : HILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALHGDHE 
           ________________________________________________________________________________________________________________________ 

           _______________________________304_________________________________________348_________________368______________________ 
 5uqo(A) : GGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKNSEIA 
         :                                                                                                                          
 6bol(A) : GGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKNSEIA 
           _______________________________304_________________________________________348_________________368______________________ 

           _________________________418______________________________________________                                               
 5uqo(A) : PAVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLK                                               
         :                                                                                                                          
 6bol(A) : PAVLTEHGKTKNPHPNVDAASGVLFYHYAFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLK                                               
           _________________________418______________________________________________                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.4
Translation
(A) 		0.5
Closure
(%) 		53.4
Bending Residues
( green ) 		  83 - 84
  93 - 94
  304 - 309
  348 - 361
  368 - 375
  418 - 424
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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