2-Methylcitrate Synthase, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Methylcitrate Synthase, Mitochondrial
  Conformer 1
(PDB)
5uqo (A)
  Conformer 2
(PDB)
5uqu (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 311 0.5   33 - 83   94 - 305   351 - 351   416 - 462
2 119 0.81   84 - 93   306 - 350   352 - 415

Sequence


           ____________________________________________________83________93________________________________________________________ 
 5uqo(A) : *AEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQSHLP 
         :                                                                                                                          
 5uqu(B) : TAEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQSHLP 
           ____________________________________________________83________93________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5uqo(A) : QHILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALHGDH 
         :                                                                                                                          
 5uqu(B) : QHILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALHGDH 
           ________________________________________________________________________________________________________________________ 

           ________________________________304___________________________________________350_______________________________________ 
 5uqo(A) : EGGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKNSEI 
         :                                                                                                                          
 5uqu(B) : EGGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHAVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKNSEI 
           ________________________________304___________________________________________350_______________________________________ 

           _______________________415__________________________________________________                                             
 5uqo(A) : APAVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLK*                                             
         :                                                                                                                          
 5uqu(B) : APAVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLKK                                             
           _______________________415__________________________________________________                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.4
Translation
(A)
0.1
Closure
(%)
80.6
Bending Residues
( green )
  83 - 84
  93 - 95
  304 - 308
  350 - 352
  415 - 421
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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