5'-Nucleotidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 5'-Nucleotidase
  Conformer 1
(PDB)
4h1s (A)
  Conformer 2
(PDB)
4h2i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 312 0.36   29 - 337   339 - 340   403 - 405
2 205 1.38   338 - 338   341 - 402   406 - 547

Sequence


           ________________________________________________________________________________________________________________________ 
 4h1s(A) : *WELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIK 
         :                                                                                                                          
 4h2i(A) : MWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4h1s(A) : AKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPF 
         :                                                                                                                          
 4h2i(A) : AKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPF 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________333____________________________________________________ 
 4h1s(A) : IVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDNY--qELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHTDEMFWNHVS 
         :                                                                                                                          
 4h2i(A) : IVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHADEMFWNHVS 
           _________________________________________________________________333____________________________________________________ 

           ______________402_______________________________________________________________________________________________________ 
 4h1s(A) : MCILNGGGIRSPIDERNNGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGG 
         :                                                                                                                          
 4h2i(A) : MCILNGGGIRSPIDERNDGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGG 
           ______________402_______________________________________________________________________________________________________ 

           ____________________________________________                                                                             
 4h1s(A) : DGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFS                                                                             
         :                                                                                                                          
 4h2i(A) : DGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFS                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.2
Translation
(A)
-0.2
Closure
(%)
57.7
Bending Residues
( green )
  333 - 341
  402 - 406
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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