6-Phosphogluconate Dehydrogenase, Decarboxylating

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 6-Phosphogluconate Dehydrogenase, Decarboxylating
  Conformer 1
(PDB)
3fwn (B)
  Conformer 2
(PDB)
2zyd (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 332 0.33   27 - 28   105 - 110   128 - 134   144 - 144   146 - 150   152 - 152   155 - 173   175 - 465
2 130 0.16   4 - 26   29 - 104   111 - 127   135 - 143   145 - 145   151 - 151   153 - 154   174 - 174

Sequence


           _______________________26___________________________________________________________________________104___110___________ 
 3fwn(B) : SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 
         :                                                                                                                          
 2zyd(B) : SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 
           _______________________26___________________________________________________________________________104___110___________ 

           ___127____134______143____150____________________173____________________________________________________________________ 
 3fwn(B) : FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 
         :                                                                                                                          
 2zyd(B) : FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 
           ___127____134______143____150____________________173____________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fwn(B) : KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFR 
         :                                                                                                                          
 2zyd(B) : KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFR 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________              
 3fwn(B) : AGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQIGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD              
         :                                                                                                                          
 2zyd(B) : AGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL*              
           ___________________________________________________________________________________________________________              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.2
Translation
(A)
-0.1
Closure
(%)
99.0
Bending Residues
( green )
  26 - 29
  104 - 105
  110 - 111
  127 - 128
  134 - 135
  143 - 146
  150 - 155
  173 - 175
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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