5-Aminolevulinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 5-Aminolevulinate Synthase
  Conformer 1
(PDB)
2bwn (B)
  Conformer 2
(PDB)
2bwn (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 338 0.34   4 - 315   326 - 333   375 - 393
2 51 0.67   316 - 325   334 - 374

Sequence


           ________________________________________________________________________________________________________________________ 
 2bwn(B) : MDYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNAND 
         :                                                                                                                          
 2bwn(E) : *DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNAND 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2bwn(B) : ATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRID 
         :                                                                                                                          
 2bwn(E) : ATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRID 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________315_______325_____333____________________________ 
 2bwn(B) : IFNGTLAaYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPI 
         :                                                                                                                          
 2bwn(E) : IFNGTLAaYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPI 
           _______________________________________________________________________315_______325_____333____________________________ 

           __________374_________________________                                                                                   
 2bwn(B) : NFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDL****                                                                                   
         :                                                                                                                          
 2bwn(E) : NFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR                                                                                   
           __________374_________________________                                                                                   

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.9
Translation
(A)
-0.8
Closure
(%)
87.4
Bending Residues
( green )
  315 - 316
  325 - 327
  333 - 334
  374 - 375
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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