Aspartate Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase
  Conformer 1
(PDB)
1j32 (A)
  Conformer 2
(PDB)
1j32 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 323 0.24   3 - 9   35 - 338   354 - 356   360 - 368
2 38 0.29   31 - 34   339 - 353   357 - 359   369 - 384

Sequence


           ________9_______________________34______________________________________________________________________________________ 
 1j32(A) : MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIP 
         :                                                                                                                          
 1j32(B) : MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIP 
           ________9_______________________34______________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1j32(A) : APFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 
         :                                                                                                                          
 1j32(B) : APFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________338____________353___359_ 
 1j32(A) : MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADD 
         :                                                                                                                          
 1j32(B) : MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADD 
           _______________________________________________________________________________________________338____________353___359_ 

           __365_______________________                                                                                             
 1j32(A) : CIRLSYATDLDTIKRGMERLEKFLHGIL                                                                                             
         :                                                                                                                          
 1j32(B) : CIRLSYATDLDTIKRGMERLEKFLHGIL                                                                                             
           __365_______________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.4
Translation
(A)
-0.1
Closure
(%)
49.2
Bending Residues
( green )
  9 - 31
  34 - 36
  338 - 340
  353 - 354
  356 - 357
  359 - 360
  365 - 369
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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