DNA Polymerase Beta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Polymerase Beta
  Conformer 1
(PDB)
2fmp (A)
  Conformer 2
(PDB)
1bpe  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 245 2.47   86 - 333
2 35 5.72   14 - 85

Sequence


           _________________________________________________________________________84_____________________________________________ 
 2fmp(A) : TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNE 
         :                                                                                                                          
 1bpe    : **NGGITDMLVELANF------------------------------gAEAKKLP-------eKIDEFLATGKLRKLEKIRRDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNE 
           _________________________________________________________________________84_____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2fmp(A) : DKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 
         :                                                                                                                          
 1bpe    : DKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSEN---e 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________                                   
 2fmp(A) : YPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE                                   
         :                                                                                                                          
 1bpe    : YPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQWRYREPKDRSE                                   
           ______________________________________________________________________________________                                   

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
93.0
Translation
(A)
1.6
Closure
(%)
76.9
Bending Residues
( green )
  84 - 94
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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