DNA Primase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Primase
  Conformer 1
(PDB)
1t3w (B)
  Conformer 2
(PDB)
1t3w (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 76 2.48   452 - 528
2 34 0.69   545 - 578

Sequence


           ________________________________________________________________________523_____________________________________________ 
 1t3w(B) : KRTTrILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSwDDIADKNIAEQTFTDSLNHfDSLLELRQEELIARERTHGLSNEERL 
         :                                                                                                                          
 1t3w(A) : KRTTrILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSwDDIADKNIAEQTFTDSLNHfDSLLELRQEELIARERTHGLSNEERL 
           ________________________________________________________________________523_____________________________________________ 

           ____________                                                                                                             
 1t3w(B) : ELWTLNQELAKK                                                                                                             
         :                                                                                                                          
 1t3w(A) : ELWTLNQELAK*                                                                                                             
           ____________                                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
34.5
Translation
(A)
-10.1
Closure
(%)
86.1
Bending Residues
( green )
  523 - 545
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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