DNA Repair Protein Xrcc4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Repair Protein Xrcc4
  Conformer 1
(PDB)
1fu1 (A)
  Conformer 2
(PDB)
1ik9 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 118 0.81   3 - 127
2 21 0.55   150 - 171

Sequence


           ________________________________________________________________________________________________________________________ 
 1fu1(A) : MERKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPADVYTFNFSKES-yFFFEKNLKDVSFRLGSFNLEKVENPA 
         :                                                                                                                          
 1ik9(B) : MERKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLS------vYTFNFSKESAYFFFEKNLKDVSFRLGSFNLEKVENPA 
           ________________________________________________________________________________________________________________________ 

           ___126___________________________________________________________________________                                        
 1fu1(A) : EVIRELIy--lDTTAENQAKNEHLQKENERLLRDWNDVQGRFEK-vSAKEALETDLYK***********************                                        
         :                                                                                                                          
 1ik9(B) : EVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNA                                        
           ___126___________________________________________________________________________                                        

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.5
Translation
(A)
-0.8
Closure
(%)
80.3
Bending Residues
( green )
  126 - 150
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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