Fab Fragment Of 8F5 Antibody Against Human Rhinovirus 3 Serotype 2 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab Fragment Of 8F5 Antibody Against Human Rhinovirus 3 Serotype 2 4
  Conformer 1
(PDB)
1bbd (H)
  Conformer 2
(PDB)
1txv (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 116 2.33   3 - 118
2 93 0.66   119 - 216

Sequence


           ____________________________________________________________________________________________________________________118_ 
 1bbd(H) : EVQLQQSGAELVRPGASVKLSCTTSGFNIKDIYIHWVKQRPEQGLEWIGRLDPANGYTKYDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYC-DGYYSYYDMDYWGPGTSVTVSSA 
         :                                                                                                                          
 1txv(H) : EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYVHWVKQRPEQGLEWIGRIDPANGYTKYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYCVRPLYDYYAMDYWGQGTSVTVSSA 
           ____________________________________________________________________________________________________________________119_ 

           ___________________________________________________________________________________________________                      
 1bbd(H) : KTTAPSVYPLAPVC-----sSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR                      
         :                                                                                                                          
 1txv(H) : KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR                      
           ___________________________________________________________________________________________________                      

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
47.9
Translation
(A)
-2.3
Closure
(%)
90.5
Bending Residues
( green )
  118 - 121
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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