High Level Kasugamycin Resistance Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name High Level Kasugamycin Resistance Protein
  Conformer 1
(PDB)
1qyr (A)
  Conformer 2
(PDB)
1qyr (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 148 0.61   19 - 138   166 - 170   175 - 186   191 - 201
2 100 0.71   139 - 165   171 - 174   187 - 190   202 - 266

Sequence


           _______________________________________________________________________________________________________________________1 
 1qyr(A) : QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADM 
         :                                                                                                                          
 1qyr(B) : QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADM 
           _______________________________________________________________________________________________________________________1 

           38________________________165__170_174_________186_190________201_______________________________________________________ 
 1qyr(A) : HFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQ 
         :                                                                                                                          
 1qyr(B) : HFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQ 
           38________________________165__170_174_________186_190________201_______________________________________________________ 

           ____________                                                                                                             
 1qyr(A) : YCQMANYLAENA                                                                                                             
         :                                                                                                                          
 1qyr(B) : YCQMANYLAENA                                                                                                             
           ____________                                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.6
Translation
(A)
0.1
Closure
(%)
56.8
Bending Residues
( green )
  138 - 139
  165 - 166
  170 - 171
  174 - 175
  186 - 187
  190 - 191
  201 - 202
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download