Integrin Beta-3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Integrin Beta-3
  Conformer 1
(PDB)
1txv (B)
  Conformer 2
(PDB)
1u8c (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 243 2.29   108 - 348   350 - 351
2 190 4.87   3 - 107   349 - 349   352 - 438

Sequence


           ________________________________________________________________________________________________________107_____________ 
 1txv(B) : GPNICTTRGVSSCQQCLAVSPMCAWCSDEALPLGSPRCDLKENLLKDNCAPESIEFPVSEARVLEDRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDL 
         :                                                                                                                          
 1u8c(B) : GPNICTTRGVSSCQQCLAVSPMCAWCSDEALPLGSPRCDLKENLLKDNCA---iEFPVSEARVLEDRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDL 
           _______________________________________________________________________________________________________1107_____________ 

           ________________________________________________________________________________________________________________________ 
 1txv(B) : SYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRN 
         :                                                                                                                          
 1u8c(B) : SYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRN 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________344________________ 
 1txv(B) : DASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVR 
         :                                                                                                                          
 1u8c(B) : DASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVR 
           ____________________________________________________________________________________________________1344________________ 

           ________________________________________________________________________________________________________________________ 
 1txv(B) : DLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQ**************************************** 
         :                                                                                                                          
 1u8c(B) : DLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDcDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1txv(B) : ************************************************************************************************************************ 
         :                                                                                                                          
 1u8c(B) : SSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDREPYMTENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPECP 
           ________________________________________________________________________________________________________________________ 

           __                                                                                                                       
 1txv(B) : **                                                                                                                       
         :                                                                                                                          
 1u8c(B) : KG                                                                                                                       
           __                                                                                                                       

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
67.2
Translation
(A)
-1.9
Closure
(%)
73.1
Bending Residues
( green )
  107 - 111
  344 - 353
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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