Iota-Carrageenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iota-Carrageenase
  Conformer 1
(PDB)
1ktw (A)
  Conformer 2
(PDB)
1h80 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 394 0.47   30 - 307   373 - 442   444 - 489
2 32 0.75   308 - 372   443 - 443

Sequence


           ________________________________________________________________________________________________________________________ 
 1ktw(A) : VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGF 
         :                                                                                                                          
 1h80(B) : VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ktw(A) : LVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNI 
         :                                                                                                                          
 1h80(B) : LVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNI 
           ________________________________________________________________________________________________________________________ 

           _____________________________________307_______________________________________________________372______________________ 
 1ktw(A) : RCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYAwAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLK 
         :                                                                                                                          
 1h80(B) : RCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELF----------------------gCAQT-----aRVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLK 
           _____________________________________307_______________________________________________________372______________________ 

           ______________________________________435________________________________________________________                        
 1ktw(A) : QDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER                        
         :                                                                                                                          
 1h80(B) : QDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER                        
           ______________________________________435________________________________________________________                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.3
Translation
(A)
-0.3
Closure
(%)
70.3
Bending Residues
( green )
  307 - 308
  372 - 378
  435 - 445
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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