Leucine-Responsive Regulatory Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Leucine-Responsive Regulatory Protein
  Conformer 1
(PDB)
2gqq (D)
  Conformer 2
(PDB)
2gqq (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 86 0.84   76 - 161
2 45 0.61   15 - 59

Sequence


           __________________________________________________59____________________________________________________________________ 
 2gqq(D) : ****LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAY 
         :                                                                                                                          
 2gqq(C) : PGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAY 
           __________________________________________________59____________________________________________________________________ 

           _____________________________________                                                                                    
 2gqq(D) : RKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR                                                                                    
         :                                                                                                                          
 2gqq(C) : RKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR                                                                                    
           _____________________________________                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.2
Translation
(A)
1.5
Closure
(%)
86.3
Bending Residues
( green )
  59 - 76
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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