Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB) 		2pav (A)
  Conformer 2
(PDB) 		8a2r (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 195 0.73   140 - 140   142 - 335
2 153 1.0   8 - 139   141 - 141   336 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 2pav(A) : TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQ-----dSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV 
         :                                                                                                                          
 8a2r(C) : *TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMqKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV 
           ________________________________________________________________________________________________________________________ 

           _______139______________________________________________________________________________________________________________ 
 2pav(A) : PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT 
         :                                                                                                                          
 8a2r(C) : PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT 
           _______139______________________________________________________________________________________________________________ 

           ___________________________________________________________________________________335__________________________________ 
 2pav(A) : IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 
         :                                                                                                                          
 8a2r(C) : IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 
           ___________________________________________________________________________________335__________________________________ 

           ______                                                                                                                   
 2pav(A) : VHRKCF                                                                                                                   
         :                                                                                                                          
 8a2r(C) : VHRKCF                                                                                                                   
           ______                                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.1
Translation
(A) 		-0.1
Closure
(%) 		67.3
Bending Residues
( green ) 		  139 - 143
  335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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