Alpha1,3-Fucosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha1,3-Fucosyltransferase
  Conformer 1
(PDB) 		2nzw (A)
  Conformer 2
(PDB) 		2nzy (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 313 0.89   3 - 28   47 - 60   64 - 346
2 21 0.91   29 - 46   61 - 63

Sequence


           __________________________28________________46____________60_63_________________________________________________________ 
 2nzw(A) : MFQPLLDAYVESASIEKMASKSPPPLKIAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYL 
         :                                                                                                                          
 2nzy(B) : MFQPLLDAYVESASIEKMASKSPPPLKIAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNP----------qNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYL 
           __________________________28________________46____________60_63_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2nzw(A) : RMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFEN 
         :                                                                                                                          
 2nzy(B) : RMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFEN 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________            
 2nzw(A) : TQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYHDNP            
         :                                                                                                                          
 2nzy(B) : TQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYHDN*            
           _____________________________________________________________________________________________________________            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.2
Translation
(A) 		-0.5
Closure
(%) 		12.4
Bending Residues
( green ) 		  28 - 29
  46 - 47
  60 - 61
  63 - 64
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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