Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Subunit 2
  Conformer 1
(PDB) 		1fto (A)
  Conformer 2
(PDB) 		1lb9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 148 0.31   42 - 48   108 - 218   227 - 249   253 - 259
2 105 0.36   7 - 41   49 - 107   219 - 226   250 - 252

Sequence


           ___________________________________41_____48________________________________________________________107_________________ 
 1fto(A) : TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
         :                                                                                                                          
 1lb9(A) : TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGTPIESA 
           ___________________________________41_____48________________________________________________________107_________________ 

           ___________________________________________________________________________________________218_____226__________________ 
 1fto(A) : EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 
         :                                                                                                                          
 1lb9(A) : EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 
           ___________________________________________________________________________________________218_____226__________________ 

           __249____________                                                                                                        
 1fto(A) : GLLDKLKNKWWYDKGEC                                                                                                        
         :                                                                                                                          
 1lb9(A) : GLLDKLKNKWWYDKGEC                                                                                                        
           __249____________                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.7
Translation
(A) 		0.1
Closure
(%) 		96.6
Bending Residues
( green ) 		  41 - 42
  48 - 49
  107 - 108
  218 - 219
  226 - 231
  249 - 250
  252 - 253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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