Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glyceraldehyde-3-Phosphate Dehydrogenase
  Conformer 1
(PDB) 		1dc6 (A)
  Conformer 2
(PDB) 		5za0 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 160 0.4   6 - 151   210 - 216   267 - 267   318 - 324
2 158 0.27   152 - 209   217 - 266   268 - 317

Sequence


           ________________________________________________________________________________________________________________________ 
 1dc6(A) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
         :                                                                                                                          
 5za0(A) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
           ________________________________________________________________________________________________________________________ 

           ____________________________151____________________________________________________206__________________________________ 
 1dc6(A) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
         :                                                                                                                          
 5za0(A) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
           ____________________________152____________________________________________________207__________________________________ 

           _______________________266_____________________________________________314________________                               
 1dc6(A) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
         :                                                                                                                          
 5za0(A) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
           _______________________267_____________________________________________315________________                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.1
Translation
(A) 		0.3
Closure
(%) 		87.4
Bending Residues
( green ) 		  151 - 152
  206 - 222
  266 - 268
  314 - 318
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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