Immunoglobulin Fab Fragment (Mc/pc603)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Immunoglobulin Fab Fragment (Mc/pc603)
  Conformer 1
(PDB) 		1mcp (L)
  Conformer 2
(PDB) 		1nca (L)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 104 1.67   4 - 11   14 - 110   170 - 174
2 103 0.93   12 - 13   111 - 169   175 - 216

Sequence


           _________11________________________________________________________________________________________________110__________ 
 1mcp(L) : DIVMTQSPSSLSVSAGERVTMSCKSSQSLLNSGNQKNFLAWYQQKPGQPPKLLIYGASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDHSYPLTFGAGTKLEIKRADAAPT 
         :                                                                                                                          
 1nca(L) : DIVMTQSPKFMSTSVGDRVTITCKASQDVSTA------VVWYQQKPGQSPKLLIYWASTRHIGVPDRFAGSGSGTDYTLTISSVQAEDLALYYCQQHYSPPWTFGGGTKLEIKRADAAPT 
           _________11________________________________________________________________________________________________104__________ 

           ______________________________________________169__174______________________________________________                     
 1mcp(L) : VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                     
         :                                                                                                                          
 1nca(L) : VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                     
           ______________________________________________163__168______________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.0
Translation
(A) 		0.1
Closure
(%) 		88.9
Bending Residues
( green ) 		  11 - 14
  110 - 111
  169 - 170
  174 - 175
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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