Kdo-8-Phosphate Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kdo-8-Phosphate Synthetase
  Conformer 1
(PDB) 		1lrq (A)
  Conformer 2
(PDB) 		1jcx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 214 0.15   1004 - 1010   1020 - 1040   1042 - 1182   1184 - 1220   1247 - 1262
2 37 0.13   1011 - 1019   1041 - 1041   1183 - 1183   1221 - 1246

Sequence


           _____1010_____1019_________________1040_________________________________________________________________________________ 
 1lrq(A) : EKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 
         :                                                                                                                          
 1jcx(A) : EKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 
           _____1010_____1019_________________1040_________________________________________________________________________________ 

           _________________________________________________________1182__________________________________1220_____________________ 
 1lrq(A) : NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATGSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLS 
         :                                                                                                                          
 1jcx(A) : NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQWAKVIYDATHSVQLP--------gMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLS 
           _________________________________________________________1182__________________________________1220_____________________ 

           _1246__________________                                                                                                  
 1lrq(A) : QLEGIIEAILEIREVASKYYETI                                                                                                  
         :                                                                                                                          
 1jcx(A) : QLEGIIEAILEIREVASKYYETI                                                                                                  
           _1246__________________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.0
Translation
(A) 		0.0
Closure
(%) 		95.8
Bending Residues
( green ) 		  1010 - 1011
  1019 - 1020
  1040 - 1042
  1182 - 1190
  1220 - 1223
  1246 - 1247
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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