DynDom - Protein Domain Motions

Maltose Transport System Permease Protein Malf

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Maltose Transport System Permease Protein Malf
Conformer 1 (PDB)	2r6g (F)
Conformer 2 (PDB)	3puz (F)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	128	2.31	20 - 92 102 - 106 254 - 256 261 - 277 449 - 449 471 - 471 473 - 475 477 - 501
2	155	1.45	93 - 101 107 - 253 257 - 260
3	194	0.61	278 - 448 450 - 470 472 - 472 476 - 476

Sequence

`______________________________________________________________________________92______101__106__________________________` `2r6g(F) : DALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQ` `:` `3puz(F) : ****SVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQ` `______________________________________________________________________________92______101__106__________________________` `____________________________________________________________________________________________________________________253_` `2r6g(F) : LALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIGFYQSITAnWGDEKLSPG` `:` `3puz(F) : LALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIGFYQSITA---dEKLSPG` `____________________________________________________________________________________________________________________253_` `__259_______________277_________________________________________________________________________________________________` `2r6g(F) : YTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLII` `:` `3puz(F) : YTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLII` `__259_______________277_________________________________________________________________________________________________` `_______________________________________________________________________448___________________470__475___________________` `2r6g(F) : VNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLI` `:` `3puz(F) : VNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLI` `_______________________________________________________________________448___________________470__475___________________` `__________` `2r6g(F) : FLLVGALAIV` `:` `3puz(F) : FLLVGALAI` `__________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	14.7
Translation (A)	1.7
Closure (%)	83.7
Bending Residues ( green )	92 - 93 101 - 102 106 - 107 253 - 254 256 - 257 259 - 261
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	13.4
Translation (A)	1.1
Closure (%)	80.0
Bending Residues ( green )	277 - 278 448 - 452 470 - 473 475 - 477
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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