Nitrate/nitrite Response Regulator Protein Narl

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nitrate/nitrite Response Regulator Protein Narl
  Conformer 1
(PDB) 		1a04 (A)
  Conformer 2
(PDB) 		1zg5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 28 0.46   158 - 161   189 - 214
2 26 0.52   162 - 188

Sequence


           ________________________________________________________________________________________________________________________ 
 1a04(A) : EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAA 
         :                                                                                                                          
 1zg5(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ___________________________161________________________188____________________________                                    
 1a04(A) : AGEMVLSEALTPVLAASLeRDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF                                    
         :                                                                                                                          
 1zg5(A) : *******************RDVNQLTPRERDILKLIAQGLPNK-iARRLDITESTVKVHVKH-lKK-kLKSRVEAAVWVHQERIF                                    
           ___________________________161________________________188____________________________                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.3
Translation
(A) 		0.3
Closure
(%) 		98.7
Bending Residues
( green ) 		  161 - 162
  188 - 189
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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