Peptidyl-Prolyl Cis-Trans Isomerase Slyd

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peptidyl-Prolyl Cis-Trans Isomerase Slyd
  Conformer 1
(PDB) 		4odl (B)
  Conformer 2
(PDB) 		4odm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 92 0.32   3 - 65   120 - 148
2 54 0.61   66 - 119

Sequence


           _______________________________________________________________65__________________________________________________118__ 
 4odl(B) : MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHP 
         :                                                                                                                          
 4odm(A) : MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHP 
           _______________________________________________________________65__________________________________________________118__ 

           ______________________________                                                                                           
 4odl(B) : LAGKDLDFQVEVVKVREATPEELLHGHAHP                                                                                           
         :                                                                                                                          
 4odm(A) : LAGKDLDFQVEVVKVREATPEELLHGHAHL                                                                                           
           ______________________________                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.2
Translation
(A) 		-0.2
Closure
(%) 		46.9
Bending Residues
( green ) 		  65 - 66
  118 - 120
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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