Protein (Actin)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Actin)
  Conformer 1
(PDB) 		1yag (A)
  Conformer 2
(PDB) 		3mfp (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 135 1.13   14 - 32   50 - 55   66 - 68   70 - 107   115 - 143   331 - 332   334 - 372
2 21 1.31   33 - 42   56 - 65   69 - 69
3 195 1.32   108 - 114   144 - 330   333 - 333

Sequence


           ______________________________32________42_____________________65_______________________________________107____114______ 
 1yag(A) : ***EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMT 
         :                                                                                                                          
 3mfp(A) : DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 
           ______________________________32________42_____________________65_______________________________________107____114______ 

           ____________________143_________________________________________________________________________________________________ 
 1yag(A) : QIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSY 
         :                                                                                                                          
 3mfp(A) : QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 
           ____________________143_________________________________________________________________________________________________ 

           _______________________________________________________________________________________330______________________________ 
 1yag(A) : ELPDGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQ 
         :                                                                                                                          
 3mfp(A) : ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 
           _______________________________________________________________________________________330______________________________ 

           _______________                                                                                                          
 1yag(A) : EYDESGPSIVHHKCF                                                                                                          
         :                                                                                                                          
 3mfp(A) : EYDEAGPSIVHRKCF                                                                                                          
           _______________                                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		21.1
Translation
(A) 		0.3
Closure
(%) 		76.1
Bending Residues
( green ) 		  32 - 33
  42 - 57
  65 - 70
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		9.7
Translation
(A) 		0.3
Closure
(%) 		45.7
Bending Residues
( green ) 		  107 - 108
  114 - 115
  143 - 144
  330 - 334
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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