Protein (Aspartate Carbamoyltransferase)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Aspartate Carbamoyltransferase)
  Conformer 1
(PDB) 		3csu (C)
  Conformer 2
(PDB) 		1d09 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 159 0.78   3 - 142   156 - 156   179 - 183   287 - 289   293 - 306
2 141 0.42   143 - 155   157 - 178   184 - 286   290 - 292

Sequence


           ________________________________________________________________________________________________________________________ 
 3csu(C) : ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSL----eTLADTISVISTYVDAIVMRHPQEGAARLATEFSG 
         :                                                                                                                          
 1d09(A) : ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSG 
           ________________________________________________________________________________________________________________________ 

           ___________________142__________155____________________178_182__________________________________________________________ 
 3csu(C) : NVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEY 
         :                                                                                                                          
 1d09(A) : NVPVLNAGDGSNQHPTQTLLDLFTIQQTQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEY 
           ___________________142__________155____________________178_182__________________________________________________________ 

           ___________________________________________286___292__________________                                                   
 3csu(C) : ANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDL**                                                   
         :                                                                                                                          
 1d09(A) : ANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL                                                   
           ___________________________________________286___292__________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.5
Translation
(A) 		-0.3
Closure
(%) 		99.8
Bending Residues
( green ) 		  142 - 143
  155 - 157
  178 - 179
  182 - 184
  286 - 287
  289 - 290
  292 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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