Rod Shape-Determining Protein Mreb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Rod Shape-Determining Protein Mreb
  Conformer 1
(PDB) 		4czm (A)
  Conformer 2
(PDB) 		4cze (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 291 1.2   12 - 40   67 - 331
2 26 1.37   41 - 66

Sequence


           _____________________________39________________________65_______________________________________________________________ 
 4czm(A) : ISNDIAIDLGTANTLIYQKGKGIVLNEPSVVALRNVGGRKVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGSGNPKVIVCVPSGATAVERRAINDSCL 
         :                                                                                                                          
 4cze(A) : *SNDIAIDLGTANTLIYQKGKGIVLNEPSVVALRNVGGRKVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGFVNPKVIVCVPSGATAVERRAINDSCL 
           _____________________________39________________________65_______________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4czm(A) : NAGARRVGLIDEPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIISYMRRHHNLLIGETTAERIKKEIGTARAPADGEGLSIDVKGRDLMQGVPREV 
         :                                                                                                                          
 4cze(A) : NAGARRVGLIDEPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIISYMRRHHNLLIGETTAERIKKEIGTARAP---eGLSIDVKGRDLMQGVPREV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________                         
 4czm(A) : RISEKQAADALAEPVGQIVEAVKVALEATPPELADDIADKGIMLTGGGALLRGLDAEIRDHTGLPVTVADDPLSCVALGCGKVLEHPKWMKGVLES                         
         :                                                                                                                          
 4cze(A) : RISEKQAADALAEPVGQIVEAVKVALEATPPELASDIADKGIMLTGGGALLRGLDAEIRDHTGLPVTVADDPLSCVALGCGKVLE***********                         
           ________________________________________________________________________________________________                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.2
Translation
(A) 		0.2
Closure
(%) 		26.7
Bending Residues
( green ) 		  39 - 41
  65 - 67
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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