Shikimate 5-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Shikimate 5-Dehydrogenase
  Conformer 1
(PDB) 		1wxd (B)
  Conformer 2
(PDB) 		2cy0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 134 0.44   22 - 23   109 - 230   249 - 249   252 - 260
2 124 0.41   3 - 21   24 - 108   231 - 248   250 - 251

Sequence


           ___________________21__________________________________________________________________________________106______________ 
 1wxd(B) : MLRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQVEGRLFGFNTDAPGFLEALKAGGIPLKGPAL 
         :                                                                                                                          
 2cy0(A) : MLRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQVEGRLFGFNTDAPGFLEALKAGGIPLKGPAL 
           ___________________21__________________________________________________________________________________106______________ 

           ___________________________________________________________________________________________________________230__________ 
 1wxd(B) : VLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKAREARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLKVQTGLPMLAWQGALAF 
         :                                                                                                                          
 2cy0(A) : VLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKAREARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLKVQTGLPMLAWQGALAF 
           ___________________________________________________________________________________________________________230__________ 

           _____248_______________                                                                                                  
 1wxd(B) : RLWTGLLPDPSGMEEAARRALGV                                                                                                  
         :                                                                                                                          
 2cy0(A) : RLWTGLLPDPSGMEEAARRALG*                                                                                                  
           _____248_______________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.5
Translation
(A) 		-0.1
Closure
(%) 		92.6
Bending Residues
( green ) 		  21 - 24
  106 - 109
  230 - 231
  248 - 252
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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