Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator (Ntrc Family)
  Conformer 1
(PDB) 		1ny5 (A)
  Conformer 2
(PDB) 		1ny6 (K)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 141 1.01   146 - 146   158 - 165   175 - 183   189 - 306   308 - 308   310 - 313
2 103 0.64   139 - 145   147 - 157   166 - 174   184 - 188   307 - 307   309 - 309   314 - 382

Sequence


           ________________________________________________________________________________________________________________________ 
 1ny5(A) : MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 
         :                                                                                                                          
 1ny6(K) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ______________________145_________157_____165______174______183__188____________________________________________________ 
 1ny5(A) : LRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 
         :                                                                                                                          
 1ny6(K) : ****************EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 
           ______________________145_________157_____165______174______183__188____________________________________________________ 

           _______________________________________________________________306____313_______________________________________________ 
 1ny5(A) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 
         :                                                                                                                          
 1ny6(K) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 
           _______________________________________________________________306____313_______________________________________________ 

           ________________________                                                                                                 
 1ny5(A) : NVIERAVLFSEGKFIDRGELSCLV                                                                                                 
         :                                                                                                                          
 1ny6(K) : NVIERAVLFSEGKFIDRGELSCLV                                                                                                 
           ________________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.2
Translation
(A) 		0.3
Closure
(%) 		80.9
Bending Residues
( green ) 		  145 - 147
  157 - 158
  165 - 166
  174 - 175
  183 - 184
  188 - 189
  306 - 310
  313 - 314
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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