Trehalose Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Trehalose Synthase
  Conformer 1
(PDB) 		4tvu (A)
  Conformer 2
(PDB) 		4lxf (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 497 2.19   12 - 323   351 - 547
2 23 4.64   328 - 350

Sequence


           ________________________________________________________________________________________________________________________ 
 4tvu(A) : *****************************PEWYKSAVFYELSVRTFQDGNGDGKGDFPGLTSRLDYLKNLGVDCLWLLPWFPSPLRDDGYDVADYRGIHPDLGTLDDFKVFLREAHARGL 
         :                                                                                                                          
 4lxf(A) : PVQGSHVEGGVVEHPDAKDFGSAAALPADPTWFKHAVFYEVLVRAFFDASADGSGDLRGLIDRLDYLQWLGIDCIWLPPFYDSPLRDGGYDIRDFYKVLPEFGTVDDFVALVDAAHRRGI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4tvu(A) : WVIGDLVTNHTSSDHPWFQAARRGPTLPDGSPNEYHDYYVWSDEGKEYADTRIIFTDTEVSNWTLDEQAGKYYWHRFFASQPDLNYDNPKVVEELHGAARFWLDLGLDGFRVDAVPYLIE 
         :                                                                                                                          
 4lxf(A) : RIITDLVMNHTSESHPWFQESRRDP---DG-P--YGDYYVWSDTSERYTDARIIFVDTEESNWSFDPVRRQFYWHRFFSHQPDLNYDNPAVQEAMIDVIRFWLGLGIDGFRLDAVPYLFE 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________315___________________ 
 4tvu(A) : REGTSCENLPETHEILKGFRAMVDREYPGRLLLAEANQWPEEVVEYFGTEAE--PEFHMCFNFPVMPRLYMSLKREDTSSIREIMGRLPKIPSFGQWCIFLRNHDELTLEMVTDDERAFM 
         :                                                                                                                          
 4lxf(A) : REGTNCENLPETHAFLKRVRKVVDDEFPGRVLLAEANQWPGDVVEYFGDPNTGGDECHMAFHFPLMPRIFMAVRRESRFPISEIIAQTPPIPDMAQWGIFLRNHDELTLEMVTDEERDYM 
           __________________________________________________________________________________________________346___________________ 

           _____________350________________________________________________________________________________________________________ 
 4tvu(A) : YAAYAPDARMKINVGIRRRLAPLLDNDRRRIELLNTVLLALPGSPVLYYGDEIGMGDDLGLPDRNGVRTPMQWNAGTSGGFSTAQPSDCFFPPIQDPVYGFGRVNVQSQLQDPSSLLKWT 
         :                                                                                                                          
 4lxf(A) : YAEYAKDPRMKANVGIRRRLAPLLDNDRNQIELFTALLLSLPGSPVLYYGDEIGMGDVIW-----gVRIPMQWTPDRNAGFSTANPGRLYLPPSQDPVYGYQAVNVEAQRDTSTSLLNFT 
           _____________381________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________                   
 4tvu(A) : ARQLELRRAHPAFAHGDLTFIETGNPAILAFTRQY---DGETLLIVSNFAGNAQAGLLDLAPFVGRAPVTLSGASPLPVVTGNGQYPVVMGKYDYYWLRLNS                   
         :                                                                                                                          
 4lxf(A) : RTMLAVRRRHPAFAVGAFQELGGSNPSVLAYVRQVAGDDGDTVLCVNNLSRFPQPIELDLQQWTNYTPVELTGHVEFPRI-GQVPYLLTLPGHGFYWFQLTT                   
           ______________________________________________________________________________________________________                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		46.2
Translation
(A) 		2.4
Closure
(%) 		30.5
Bending Residues
( green ) 		  315 - 328
  350 - 355
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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