Triosephosphate Isomerase (E.C.5.3.1.1)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Triosephosphate Isomerase (E.C.5.3.1.1)
  Conformer 1
(PDB) 		1tpe  
  Conformer 2
(PDB) 		1iih (B)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 196 0.34   7 - 126   148 - 163   186 - 245
2 25 0.33   127 - 147   164 - 167

Sequence


           ________________________________________________________________________________________________________________________ 
 1tpe    : SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGF 
         :                                                                                                                          
 1iih(B) : SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGF 
           ________________________________________________________________________________________________________________________ 

           __126__________________147_____________163______________________________________________________________________________ 
 1tpe    : MVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVRGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE 
         :                                                                                                                          
 1iih(B) : MVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE 
           __426__________________447_____________463______________________________________________________________________________ 

           _________                                                                                                                
 1tpe    : FVDIIKATQ                                                                                                                
         :                                                                                                                          
 1iih(B) : FVDIIKATQ                                                                                                                
           _________                                                                                                                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.4
Translation
(A) 		-0.2
Closure
(%) 		100.0
Bending Residues
( green ) 		  126 - 127
  147 - 148
  163 - 190
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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