Tryptic Core Fragment Of The Lactose Repressor Of 3 Escherichia Coli 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptic Core Fragment Of The Lactose Repressor Of 3 Escherichia Coli 4
  Conformer 1
(PDB) 		1tlf (A)
  Conformer 2
(PDB) 		1efa (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 148 0.65   73 - 80   127 - 127   162 - 292   320 - 327
2 117 0.83   63 - 72   81 - 126   128 - 161   293 - 319

Sequence


           _____________________________________________________________________72_____79__________________________________________ 
 1tlf(A) : ***********************************************************SLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSG 
         :                                                                                                                          
 1efa(A) : KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSG 
           _____________________________________________________________________72_____79__________________________________________ 

           __126________________________________161________________________________________________________________________________ 
 1tlf(A) : LIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTA 
         :                                                                                                                          
 1efa(A) : LIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTA 
           __126________________________________161________________________________________________________________________________ 

           ________________________________________________292________________________319_____________________________________      
 1tlf(A) : MLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPRALADSLMQLARQVSRL      
         :                                                                                                                          
 1efa(A) : MLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTT***************************      
           ________________________________________________292________________________319_____________________________________      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.0
Translation
(A) 		0.9
Closure
(%) 		99.5
Bending Residues
( green ) 		  72 - 75
  79 - 81
  126 - 128
  161 - 162
  292 - 293
  319 - 320
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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