Ure2 Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ure2 Protein
  Conformer 1
(PDB) 		1g6w (D)
  Conformer 2
(PDB) 		1k0b (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 221 0.62   102 - 265   296 - 352
2 30 1.05   266 - 295

Sequence


           ________________________________________________________________________________________________________________________ 
 1g6w(D) : HVEYSRITKFFQEQPLEGYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLHLVNKYYKETGNPLLWSDDLADQSQINAW 
         :                                                                                                                          
 1k0b(C) : ****SRITKFFQEQPLEGYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLHLVNKYYKETGNPLLWSDDLADQSQINAW 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________263_____________________________295________________________________________ 
 1g6w(D) : LFFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAERREALVMELDTENAAAYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVDRIGINIKIEFPEVY 
         :                                                                                                                          
 1k0b(C) : LFFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAERREALVMELDTENAAAYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVDRIGINIKIEFPEVY 
           _____________________________________________263_____________________________295________________________________________ 

           ___________________                                                                                                      
 1g6w(D) : KWTKHMMRRPAVIKALRGE                                                                                                      
         :                                                                                                                          
 1k0b(C) : KWTKHMMRRPAVIKALRGE                                                                                                      
           ___________________                                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.3
Translation
(A) 		0.3
Closure
(%) 		91.6
Bending Residues
( green ) 		  263 - 266
  295 - 297
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download