Atp-Dependent RNA Helicase, Putative

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent RNA Helicase, Putative
  Conformer 1
(PDB)
1wp9 (E)
  Conformer 2
(PDB)
1wp9 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 323 0.36   3 - 209   343 - 470
2 148 0.5   210 - 342   471 - 485

Sequence


           ________________________________________________________________________________________________________________________ 
 1wp9(E) : MVLRRDLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR 
         :                                                                                                                          
 1wp9(C) : MVLRRDLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________209_______________________________ 
 1wp9(E) : ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 
         :                                                                                                                          
 1wp9(C) : ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 
           ______________________________________________________________________________________209_______________________________ 

           __________________________________________________________________________________________________341___________________ 
 1wp9(E) : SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQ 
         :                                                                                                                          
 1wp9(C) : SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQ 
           __________________________________________________________________________________________________341___________________ 

           _______________________________________________________________________________________________470_________________      
 1wp9(E) : NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVqREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYWSSRQ      
         :                                                                                                                          
 1wp9(C) : NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVqREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYWSSRQ      
           _______________________________________________________________________________________________470_________________      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.0
Translation
(A)
0.2
Closure
(%)
92.5
Bending Residues
( green )
  209 - 212
  341 - 344
  470 - 471
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download