Complement C3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement C3
  Conformer 1
(PDB)
2a73 (B)
  Conformer 2
(PDB)
2hr0 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 567 19.64   729 - 961   1265 - 1272   1306 - 1639
2 297 0.23   962 - 1264
3 23 1.55   1281 - 1303

Sequence


           ________________________________________________________________________________________________________________________ 
 2a73(B) : VQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEACKKVFLDCCNYITELRRQHARAlDEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITT 
         :                                                                                                                          
 2hr0(B) : *******************************************************************SNLDEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : WEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFI 
         :                                                                                                                          
 2hr0(B) : WEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________961__________________________________________________________ 
 2a73(B) : SDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEK 
         :                                                                                                                          
 2hr0(B) : SDGVRKSLKVVPEGIR---tVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETR-lLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEK 
           ___________________________________________________________961__________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : RQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE------nNNEKDMALTAFVLISLQEAKDICEEQ 
         :                                                                                                                          
 2hr0(B) : RQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQ 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________________________1 
 2a73(B) : VNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQ 
         :                                                                                                                          
 2hr0(B) : VNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQ 
           _______________________________________________________________________________________________________________________1 

           262_____________________________________1303____________________________________________________________________________ 
 2a73(B) : YQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMS 
         :                                                                                                                          
 2hr0(B) : YQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMS 
           262_____________________________________1303____________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : ILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQ 
         :                                                                                                                          
 2hr0(B) : ILDISMMTGFAPDTDDLKQLANGVDRYISKYELDK----rNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : KSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEE 
         :                                                                                                                          
 2hr0(B) : KSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEE 
           ________________________________________________________________________________________________________________________ 

           ______________________                                                                                                   
 2a73(B) : NQKQCQDLGAFTESMVVFGCPN                                                                                                   
         :                                                                                                                          
 2hr0(B) : NQKQCQDLGAFTESMVVFGCPN                                                                                                   
           ______________________                                                                                                   

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
151.4
Translation
(A)
-27.4
Closure
(%)
44.4
Bending Residues
( green )
  961 - 964
  1262 - 1272
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
178.1
Translation
(A)
-19.0
Closure
(%)
17.7
Bending Residues
( green )
  1265 - 1281
  1303 - 1335
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download