Dna-3-Methyladenine Glycosidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dna-3-Methyladenine Glycosidase
  Conformer 1
(PDB)
2h56 (C)
  Conformer 2
(PDB)
2h56 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 114 0.47   4 - 33   125 - 215
2 79 0.92   34 - 124

Sequence


           _______________________________33__________________________________________________________________________110__________ 
 2h56(C) : *RYFSTDSPEVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQL---aLEKPEQLYR-sDEALRQA-vSKRKIEYIRHVCEHVESGRLDFT------ 
         :                                                                                                                          
 2h56(A) : HrYFSTDSPEVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAE 
           _______________________________33__________________________________________________________________________110__________ 

           _________________________________________________________________________________________________                        
 2h56(C) : -tTVIEKLT----iGQWTAEffSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPYETVACLYLWKAAGTFAEEYRSLEELLHHGNQ                        
         :                                                                                                                          
 2h56(A) : ATTVIEKLTAIKGIGQWTAEffSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPYETVACLYLWKAAGTFAEEYRSLEELLHH***                        
           _________________________________________________________________________________________________                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.9
Translation
(A)
0.2
Closure
(%)
95.0
Bending Residues
( green )
  33 - 34
  110 - 126
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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