D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Ribose-Binding Protein
  Conformer 1
(PDB)
1ba2 (A)
  Conformer 2
(PDB)
1urp (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 139 0.47   105 - 234   261 - 269
2 128 0.36   3 - 104   235 - 260

Sequence


           ____________________________________________________________________________________________________103_________________ 
 1ba2(A) : KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTRSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 
         :                                                                                                                          
 1urp(C) : KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 
           ____________________________________________________________________________________________________103_________________ 

           _______________________________________________________________________________________________________________234______ 
 1ba2(A) : GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 
         :                                                                                                                          
 1urp(C) : GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 
           _______________________________________________________________________________________________________________234______ 

           _________________260___________                                                                                          
 1ba2(A) : GAKGVETADKVLKGEKVQAKYPVDLKLVVKQ                                                                                          
         :                                                                                                                          
 1urp(C) : GAKGVETADKVLKGEKVQAKYPVDLKLVVKQ                                                                                          
           _________________260___________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.8
Translation
(A)
-0.2
Closure
(%)
74.8
Bending Residues
( green )
  103 - 105
  234 - 237
  260 - 269
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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