Elastase (E.C.3.4.24.26)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elastase (E.C.3.4.24.26)
  Conformer 1
(PDB)
1ezm  
  Conformer 2
(PDB)
1u4g (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 176 0.74   83 - 99   114 - 120   135 - 186   197 - 296
2 118 0.41   3 - 82   100 - 113   121 - 134   187 - 196

Sequence


           ________________________________________________________________________________82_______________99___________113_______ 
 1ezm    : AEAGGPGGNQKIGKYTYGSDYGPLIVNDRCEMDDGNVITVDMNSSTDDSKTTPFRFACPTNTYKQVNGAYSPLNDAHFFGGVVFKLYRDWFGTSPLTHKLYMKVHYGRSVENAYWDGTAM 
         :                                                                                                                          
 1u4g(A) : AEAGGPGGNQKIGKYTYGSDYGPLIVNDRCEMDDGNVITVDMNSSTDDSKTTPFRFACPTNTYKQVNGAYSPLNDAHFFGGVVFKLYRDWFGTSPLTHKLYMKVHYGRSVENAYWDGTAM 
           ________________________________________________________________________________82_______________99___________113_______ 

           ___________134_________________________________________________186______195_____________________________________________ 
 1ezm    : LFGDGATMFYPLVSLDVAAHEVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRGKNDFLIGYDIKKGSGALRYMDQPSRDGRSIDNASQYYNGIDVHHSSGVYNRAFYLLANSP 
         :                                                                                                                          
 1u4g(A) : LFGDGATMFYPLVSLDVAAHEVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRGKNDFLIGYDIKKGSGALRYMDQPSRDGRSIDNASQYYNGIDVHHSSGVYNRAFYLLANSP 
           ___________134_________________________________________________186______195_____________________________________________ 

           __________________________________________________________                                                               
 1ezm    : GWDTRKAFEVFVDANRYYWTATSNYNSGACGVIRSAQNRNYSAADVTRAFSTVGVTCP                                                               
         :                                                                                                                          
 1u4g(A) : GWDTRKAFEVFVDANRYYWTATSNYNSGACGVIRSAQNRNYSAADVTRAFSTVGVTCP                                                               
           __________________________________________________________                                                               

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.4
Translation
(A)
-0.2
Closure
(%)
90.2
Bending Residues
( green )
  82 - 83
  99 - 100
  113 - 121
  134 - 135
  186 - 188
  195 - 197
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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