Fab Fragment Of 8F5 Antibody Against Human Rhinovirus 3 Serotype 2 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab Fragment Of 8F5 Antibody Against Human Rhinovirus 3 Serotype 2 4
  Conformer 1
(PDB)
1bbd (L)
  Conformer 2
(PDB)
1hin (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 110 0.81   3 - 112
2 103 0.66   113 - 215

Sequence


           ____________________________________________________________________________________________________________111_________ 
 1bbd(L) : DIVMTQSPSSLTVTTGEKVTMTCKSSQSLLNSRTQKNYLTWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLSISGVQAEDLAVYYCQNNYNYPLTFGAGTKLELKRADAAPT 
         :                                                                                                                          
 1hin(L) : DIVMTQSPSSLTVTAGEKVTMSCTSSQSLFNSGKQKNYLTWYQQKPGQPPKVLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSNPLTFGGGTKLELKRADAAPT 
           ____________________________________________________________________________________________________________105_________ 

           ___________________________________________________________________________________________________                      
 1bbd(L) : VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE                      
         :                                                                                                                          
 1hin(L) : VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR**                      
           ___________________________________________________________________________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
51.1
Translation
(A)
-0.2
Closure
(%)
99.4
Bending Residues
( green )
  111 - 115
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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