H-2 Class I Histocompatibility Antigen, K-B Alpha Chain Precursor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name H-2 Class I Histocompatibility Antigen, K-B Alpha Chain Precursor
  Conformer 1
(PDB)
1s7t (D)
  Conformer 2
(PDB)
1zt7 (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 173 0.77   4 - 176
2 96 1.55   177 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 1s7t(D) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
         :                                                                                                                          
 1zt7(C) : GPHSLRYFHTAVSRPGLGKPRFISVGYVDDTQFVRFDSDAENPRYEPRVRWMEQVEPEYWERNTQIAKGNEQIFRVNLRTALRYYNQSAGGSHTFQRMYGCEVGSDWRLLRGYEQYAYDG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________176________________________________________________________________ 
 1s7t(D) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
         :                                                                                                                          
 1zt7(C) : CDYIALNEDLKTWTAADMAALITKHKWEQAGDAERDRAYLEGTCVEWLRRYLQLGNATLPRTDSPKAHVTRHSRPEDKVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 
           _____________________________________________________176________________________________________________________________ 

           ____________________________________                                                                                     
 1s7t(D) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWEP                                                                                     
         :                                                                                                                          
 1zt7(C) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWE*                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.9
Translation
(A)
-2.2
Closure
(%)
30.8
Bending Residues
( green )
  176 - 183
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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