Hla Class I Histocompatibility Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hla Class I Histocompatibility Antigen
  Conformer 1
(PDB)
2bsv (D)
  Conformer 2
(PDB)
1i4f (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 232 1.29   3 - 194   201 - 215   229 - 248   263 - 263   268 - 271
2 39 0.97   195 - 200   216 - 228   249 - 262   264 - 267   272 - 273

Sequence


           ________________________________________________________________________________________________________________________ 
 2bsv(D) : gSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG 
         :                                                                                                                          
 1i4f(A) : GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________194___200___________214___________228____________ 
 2bsv(D) : KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
         :                                                                                                                          
 1i4f(A) : KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
           _______________________________________________________________________194___200___________214___________228____________ 

           _____248___________262__267_271____                                                                                      
 2bsv(D) : FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE                                                                                      
         :                                                                                                                          
 1i4f(A) : FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE                                                                                      
           _____248___________262__267_271____                                                                                      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
0.1
Closure
(%)
99.9
Bending Residues
( green )
  194 - 195
  200 - 201
  214 - 216
  228 - 229
  248 - 249
  262 - 264
  267 - 269
  271 - 272
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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