Lactophage P2 Receptor Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lactophage P2 Receptor Binding Protein
  Conformer 1
(PDB)
1zru (A)
  Conformer 2
(PDB)
1zru (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 140 0.29   22 - 34   112 - 117   142 - 262
2 104 0.76   19 - 21   35 - 111   118 - 141

Sequence


           _______20____________34__________________________________________________________________________111____________________ 
 1zru(A) : TIKNFTFgSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGT 
         :                                                                                                                          
 1zru(B) : TIKNF--gSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGT 
           _______20____________34__________________________________________________________________________111____________________ 

           _______141______________________________________________________________________________________________________________ 
 1zru(A) : GVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKT 
         :                                                                                                                          
 1zru(B) : GVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKT 
           _______141______________________________________________________________________________________________________________ 

           _____________                                                                                                            
 1zru(A) : PIATRGNGSYFIK                                                                                                            
         :                                                                                                                          
 1zru(B) : PIATRGNGSYFIK                                                                                                            
           _____________                                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.3
Translation
(A)
-0.2
Closure
(%)
46.3
Bending Residues
( green )
  20 - 22
  34 - 35
  111 - 118
  141 - 143
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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