50S Ribosomal Protein L22

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 50S Ribosomal Protein L22
  Conformer 1
(PDB)
1i4j (B)
  Conformer 2
(PDB)
1i4j (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 78 0.7   7 - 77   98 - 99   103 - 107
2 20 2.63   78 - 97   100 - 102

Sequence


           ___________________________________________________________________________77_______________97__102___________           
 1i4j(B) : MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLPRARGRADIIKKRTSHITVILGEKHGK           
         :                                                                                                                          
 1i4j(A) : MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLPRARGRADIIKKRTSHITVILGEKHGK           
           ___________________________________________________________________________77_______________97__102___________           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
39.3
Translation
(A)
-0.1
Closure
(%)
35.8
Bending Residues
( green )
  77 - 78
  97 - 100
  102 - 103
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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