50S Ribosomal Protein L2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 50S Ribosomal Protein L2
  Conformer 1
(PDB)
2i2v (C)
  Conformer 2
(PDB)
2awb (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 239 3.79   28 - 266
2 22 9.74   6 - 27

Sequence


           _________________________27_____________________________________________________________________________________________ 
 2i2v(C) : AVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVD 
         :                                                                                                                          
 2awb(C) : **VKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVD 
           _________________________27_____________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2i2v(C) : AAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFG 
         :                                                                                                                          
 2awb(C) : AAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFG 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 2i2v(C) : KHPVTPWGVQTKGKKTRSNKRTDKFIVRRRS                                                                                          
         :                                                                                                                          
 2awb(C) : KHPVTPWGVQTKGKKTRSNKRTDKFIVRR**                                                                                          
           _______________________________                                                                                          

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
115.4
Translation
(A)
-2.5
Closure
(%)
85.3
Bending Residues
( green )
  27 - 47
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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