Membrane Cofactor Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Membrane Cofactor Protein
  Conformer 1
(PDB)
1ckl (D)
  Conformer 2
(PDB)
1ckl (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 63 1.02   62 - 124
2 59 0.32   3 - 61

Sequence


           __________________________________________________________60____________________________________________________________ 
 1ckl(D) : CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKP 
         :                                                                                                                          
 1ckl(F) : CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKP 
           __________________________________________________________60____________________________________________________________ 

           ______                                                                                                                   
 1ckl(D) : PICEKV                                                                                                                   
         :                                                                                                                          
 1ckl(F) : PICEKV                                                                                                                   
           ______                                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
25.0
Translation
(A)
0.2
Closure
(%)
12.4
Bending Residues
( green )
  60 - 62
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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