Cytidine Monophosphate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytidine Monophosphate Kinase
  Conformer 1
(PDB) 		1cke (A)
  Conformer 2
(PDB) 		1kdt (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 101 0.94   6 - 37   115 - 149   175 - 175   178 - 223
2 77 0.88   38 - 114
3 27 0.77   150 - 174   176 - 177

Sequence


           _________________________________37__________________________________________________________________________114________ 
 1cke(A) : AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRE 
         :                                                                                                                          
 1kdt(B) : AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRE 
           _________________________________37__________________________________________________________________________114________ 

           _______________________148_______________________174_____________________________________________________                
 1cke(A) : LPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIK-------------lVPAADALVLDSTTLSIEQVIEKALQYARQKLALA                
         :                                                                                                                          
 1kdt(B) : LPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKLA**                
           _______________________148_______________________174_____________________________________________________                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.9
Translation
(A) 		0.0
Closure
(%) 		95.8
Bending Residues
( green ) 		  37 - 38
  114 - 116
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		25.9
Translation
(A) 		0.5
Closure
(%) 		41.4
Bending Residues
( green ) 		  148 - 150
  174 - 193
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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