Dna-Binding Transcriptional Dual Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dna-Binding Transcriptional Dual Regulator
  Conformer 1
(PDB)
2iks (A)
  Conformer 2
(PDB)
2iks (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 136 0.51   163 - 292   323 - 331
2 126 0.51   63 - 162   293 - 322

Sequence


           ___________________________________________________________________________________________________161__________________ 
 2iks(A) : GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNErCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAElAEELRKFPAE 
         :                                                                                                                          
 2iks(B) : *RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNErCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAElAEELRKFPAE 
           ___________________________________________________________________________________________________161__________________ 

           ___________________________________________________________________________________________________________292__________ 
 2iks(A) : TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPpQALFTTSFALLQGVdVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERVLE 
         :                                                                                                                          
 2iks(B) : TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPpQALFTTSFALLQGVdVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERVLE 
           ___________________________________________________________________________________________________________292__________ 

           _________________322____________                                                                                         
 2iks(A) : IVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS                                                                                         
         :                                                                                                                          
 2iks(B) : IVLASLD---kPKPGLTRIKRNLYRRGVLSR*                                                                                         
           _________________322____________                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.7
Translation
(A)
1.0
Closure
(%)
99.2
Bending Residues
( green )
  161 - 163
  292 - 293
  322 - 323
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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